The goal of neonDivData is to provide cleaned NEON organismal data to facilitate biodiversity research. The authors of this R data package have all spend lots of effort to clean NEON data for our own research; it makes the most sense to document such processes and provide the clean data product so that the large community can use them readily. This will save us time to dig into the extensive documenations of NEON data and to clean up the data individually.
Data products for all taxonomic groups are long data frames with names in the format of data_xxx (e.g. data_plant, data_fish). Location inforamtions are in neon_location; taxonomic informations are in neon_taxa.
Despite the aim of this R data package is to facilitate biodiversity research, we keep NAs in data products so that information about sampling effort is saved. For some taxonomic groups, we removed observations with above genus level species identification. All codes to clean up the NEON data are available within our Github repo. Users can use them to customize their own data product if needed.
Available taxonomic groups and their brief summaries:
# sites too long, don't print
knitr::kable(neonDivData::data_summary[, !names(neonDivData::data_summary) %in% c("sites", "data_package_id")])| taxon_group | n_taxa | n_sites | start_date | end_date | data_package_title | neon_ecocomdp_mapping_method | original_neon_data_product_id | original_neon_data_version | original_neon_data_doi | r_object | variable_names | units |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ALGAE | 2221 | 34 | 2014-07-02 | 2019-11-25 | ALGAE from the NEON data product: Periphyton, seston, and phytoplankton collection | neon.ecocomdp.20166.001.001 | DP1.20166.001 | RELEASE-2024 | https://doi.org/10.48443/3cvp-hw55%7Chttps://doi.org/10.48443/g2k4-d258%7Chttps://doi.org/10.48443/cebv-nn73%7Chttps://doi.org/10.48443/swyk-0p63 | data_algae | cell density | cells/cm2 OR cells/mL |
| SMALL_MAMMALS | 154 | 46 | 2013-06-19 | 2022-12-14 | SMALL_MAMMALS from the NEON data product: Small mammal box trapping | neon.ecocomdp.10072.001.001 | DP1.10072.001 | RELEASE-2024 | https://doi.org/10.48443/j1g9-2j27%7Chttps://doi.org/10.48443/h3dk-3a71%7Chttps://doi.org/10.48443/p4re-p954%7Chttps://doi.org/10.48443/nvpj-4j94 | data_small_mammal | count | unique individuals per 100 trap nights per plot per month |
| PLANTS | 6664 | 47 | 2013-06-24 | 2022-10-26 | PLANTS from the NEON data product: Plant presence and percent cover | neon.ecocomdp.10058.001.001 | DP1.10058.001 | RELEASE-2024 | https://doi.org/10.48443/abge-r811%7Chttps://doi.org/10.48443/pr5e-1q60%7Chttps://doi.org/10.48443/9579-a253%7Chttps://doi.org/10.48443/c50b-qx77 | data_plant | percent cover | percent of plot area covered by taxon |
| FISH | 158 | 28 | 2016-03-29 | 2021-12-14 | FISH from the NEON data product: Fish electrofishing, gill netting, and fyke netting counts | neon.ecocomdp.20107.001.001 | DP1.20107.001 | RELEASE-2024 | https://doi.org/10.48443/17cz-g567%7Chttps://doi.org/10.48443/7p84-6j62%7Chttps://doi.org/10.48443/etgd-3s49%7Chttps://doi.org/10.48443/kb2e-va82 | data_fish | abundance | catch per unit effort |
| BEETLES | 793 | 47 | 2013-07-03 | 2021-12-22 | BEETLES from the NEON data product: Ground beetles sampled from pitfall traps | neon.ecocomdp.10022.001.001 | DP1.10022.001 | RELEASE-2024 | https://doi.org/10.48443/tx5f-dy17%7Chttps://doi.org/10.48443/xgea-hw23%7Chttps://doi.org/10.48443/3v35-v852%7Chttps://doi.org/10.48443/rcxn-t544 | data_herp_bycatch | abundance | count per trap day |
| MACROINVERTEBRATES | 1409 | 34 | 2014-07-01 | 2021-11-23 | MACROINVERTEBRATES from the NEON data product: Macroinvertebrate collection | neon.ecocomdp.20120.001.001 | DP1.20120.001 | RELEASE-2024 | https://doi.org/10.48443/855x-0n27%7Chttps://doi.org/10.48443/gn8x-k322%7Chttps://doi.org/10.48443/zj4y-4073%7Chttps://doi.org/10.48443/je35-bc57 | data_macroinvertebrate | density | count per square meter |
| MOSQUITOES | 133 | 47 | 2014-04-09 | 2022-12-28 | MOSQUITOES from the NEON data product: Mosquitoes sampled from CO2 traps | neon.ecocomdp.10043.001.001 | DP1.10043.001 | RELEASE-2024 | https://doi.org/10.48443/9smm-v091%7Chttps://doi.org/10.48443/c7h7-q918%7Chttps://doi.org/10.48443/bxnk-jb11%7Chttps://doi.org/10.48443/3cyq-6v47 | data_mosquito | abundance | count per trap hour |
| BIRDS | 585 | 47 | 2013-06-05 | 2022-07-23 | BIRDS from the NEON data product: Breeding landbird point counts | neon.ecocomdp.10003.001.001 | DP1.10003.001 | RELEASE-2024 | https://doi.org/10.48443/s730-dy13%7Chttps://doi.org/10.48443/88sy-ah40%7Chttps://doi.org/10.48443/00pg-vm19%7Chttps://doi.org/10.48443/4a0h-fy23 | data_bird | cluster size | count of individuals |
| TICKS | 20 | 46 | 2014-04-02 | 2022-11-23 | TICKS from the NEON data product: Ticks sampled using drag cloths | neon.ecocomdp.10093.001.001 | DP1.10093.001 | RELEASE-2024 | https://doi.org/10.48443/dx40-wr20%7Chttps://doi.org/10.48443/7jh5-8s51%7Chttps://doi.org/10.48443/fh83-k817%7Chttps://doi.org/10.48443/3zmh-xx57 | data_tick | abundance | count per square meter |
| ZOOPLANKTON | 172 | 7 | 2014-07-02 | 2021-11-02 | ZOOPLANKTON from the NEON data product: Zooplankton collection | neon.ecocomdp.20219.001.001 | DP1.20219.001 | RELEASE-2024 | https://doi.org/10.48443/qzr1-jr79%7Chttps://doi.org/10.48443/150d-yf27%7Chttps://doi.org/10.48443/eqmn-5b37%7Chttps://doi.org/10.48443/6kxg-hb11 | data_zooplankton | density | count per liter |
| TICK_PATHOGENS | 16 | 18 | 2014-04-17 | 2022-09-27 | TICK_PATHOGENS from the NEON data product: Tick-borne pathogen status | neon.ecocomdp.10092.001.001 | DP1.10092.001 | RELEASE-2024 | https://doi.org/10.48443/5fab-xv19%7Chttps://doi.org/10.48443/nygx-dm71%7Chttps://doi.org/10.48443/nyst-jp72%7Chttps://doi.org/10.48443/4d7n-w481 | data_tick_pathogen | positivity rate | positive tests per pathogen per sampling event |
| HERPTILES | 137 | 41 | 2014-04-02 | 2021-10-06 | HERPTILES (bycatch) from the NEON data product: Ground beetles sampled from pitfall traps | neon.ecocomdp.10022.001.002 | DP1.10022.001 | RELEASE-2024 | https://doi.org/10.48443/tx5f-dy17%7Chttps://doi.org/10.48443/xgea-hw23%7Chttps://doi.org/10.48443/3v35-v852%7Chttps://doi.org/10.48443/rcxn-t544 | data_herp_bycatch | abundance | count per trap day |
You can install the development version of neonDivData from Github with:
install.packages("neonDivData", repos = 'https://daijiang.r-universe.dev')
neonDivData::neon_sites
#> # A tibble: 81 × 10
#> `Site Name` siteID `Domain Name` domainID State Latitude Longitude
#> <chr> <chr> <chr> <chr> <chr> <dbl> <dbl>
#> 1 Little Rock Lake LIRO Great Lakes D05 WI 46.0 -89.7
#> 2 West St Louis Creek WLOU Southern Roc… D13 CO 39.9 -106.
#> 3 Pu'u Maka'ala Natural… PUUM Pacific Trop… D20 HI 19.6 -155.
#> 4 Flint River FLNT Southeast D03 GA 31.2 -84.4
#> 5 McDiffett Creek MCDI Prairie Peni… D06 KS 38.9 -96.4
#> 6 Lewis Run LEWI Mid-Atlantic D02 VA 39.1 -78.0
#> 7 Blue River BLUE Southern Pla… D11 OK 34.4 -96.6
#> 8 Teakettle 2 Creek TECR Pacific Sout… D17 CA 37.0 -119.
#> 9 Lower Hop Brook HOPB Northeast D01 MA 42.5 -72.3
#> 10 Martha Creek MART Pacific Nort… D16 WA 45.8 -122.
#> # ℹ 71 more rows
#> # ℹ 3 more variables: `Site Type` <chr>, `Site Subtype` <chr>,
#> # `Site Host` <chr>
neonDivData::neon_taxa
#> # A tibble: 12,467 × 4
#> taxon_id taxon_name taxon_rank taxon_group
#> <chr> <chr> <chr> <chr>
#> 1 NEONDREX995034 Trachelomonas abrupta var. minor Defla… variety ALGAE
#> 2 NEONDREX1010 Achnanthidium minutissimum (Kützing) C… species ALGAE
#> 3 NEONDREX34030 Fragilaria vaucheriae (Kützing) Peters… species ALGAE
#> 4 NEONDREX194005 Placoneis elginensis (Gregory) Cox species ALGAE
#> 5 BACILLARIOCSP Bacillariophyceae sp. class ALGAE
#> 6 NEONDREX189007 Rossithidium anastasiae (Kaczmarska) P… species ALGAE
#> 7 NEONDREX212003 Chamaepinnularia evanida (Hustedt) Lan… species ALGAE
#> 8 NEONDREX7075 Amphora copulata (Kützing) Schoeman et… species ALGAE
#> 9 NEONDREX172006 Staurosira construens var. venter (Ehr… variety ALGAE
#> 10 NEONDREX18013 Brachysira microcephala (Kützing) Comp… species ALGAE
#> # ℹ 12,457 more rows
neonDivData::neon_location
#> # A tibble: 4,274 × 8
#> location_id siteID plotID latitude longitude elevation nlcdClass
#> <chr> <chr> <chr> <dbl> <dbl> <dbl> <chr>
#> 1 ABBY_001.basePlot.brd ABBY ABBY_0… 45.8 -122. 303. evergree…
#> 2 ABBY_001.basePlot.div ABBY ABBY_0… 45.8 -122. 303. evergree…
#> 3 ABBY_001.tickPlot.tck ABBY ABBY_0… 45.8 -122. 298. evergree…
#> 4 ABBY_002.basePlot.bet ABBY ABBY_0… 45.7 -122. 638. grasslan…
#> 5 ABBY_002.basePlot.brd ABBY ABBY_0… 45.7 -122. 638. grasslan…
#> 6 ABBY_002.basePlot.div ABBY ABBY_0… 45.7 -122. 638. grasslan…
#> 7 ABBY_002.mammalGrid.mam ABBY ABBY_0… 45.7 -122. 624. grasslan…
#> 8 ABBY_002.tickPlot.tck ABBY ABBY_0… 45.7 -122. 651. grasslan…
#> 9 ABBY_003.basePlot.bet ABBY ABBY_0… 45.8 -122. 602. evergree…
#> 10 ABBY_003.basePlot.brd ABBY ABBY_0… 45.8 -122. 602. evergree…
#> # ℹ 4,264 more rows
#> # ℹ 1 more variable: aquaticSiteType <chr>
neonDivData::data_algae
#> # A tibble: 110,273 × 25
#> location_id siteID unique_sample_id observation_datetime taxon_id taxon_name
#> <chr> <chr> <chr> <dttm> <chr> <chr>
#> 1 HOPB.AOS.re… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Trachelom…
#> 2 HOPB.AOS.re… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Achnanthi…
#> 3 HOPB.AOS.re… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Fragilari…
#> 4 HOPB.AOS.re… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Placoneis…
#> 5 HOPB.AOS.re… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 BACILLA… Bacillari…
#> 6 HOPB.AOS.re… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Rossithid…
#> 7 HOPB.AOS.re… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Chamaepin…
#> 8 HOPB.AOS.re… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Amphora c…
#> 9 HOPB.AOS.re… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Staurosir…
#> 10 HOPB.AOS.re… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Brachysir…
#> # ℹ 110,263 more rows
#> # ℹ 19 more variables: taxon_rank <chr>, variable_name <chr>, value <dbl>,
#> # unit <chr>, sampleCondition <chr>, perBottleSampleVolume <chr>,
#> # release <chr>, habitatType <chr>, algalSampleType <chr>, samplerType <chr>,
#> # benthicArea <chr>, samplingProtocolVersion <chr>,
#> # substratumSizeClass <chr>, phytoDepth1 <chr>, phytoDepth2 <chr>,
#> # phytoDepth3 <chr>, latitude <dbl>, longitude <dbl>, elevation <dbl>
neonDivData::data_beetle
#> # A tibble: 81,581 × 22
#> location_id siteID plotID unique_sample_id trapID observation_datetime
#> <chr> <chr> <chr> <chr> <chr> <dttm>
#> 1 ABBY_002.basePlot… ABBY ABBY_… ABBY_002.E.2016… E 2016-09-13 00:00:00
#> 2 ABBY_002.basePlot… ABBY ABBY_… ABBY_002.E.2016… E 2016-09-13 00:00:00
#> 3 ABBY_002.basePlot… ABBY ABBY_… ABBY_002.E.2016… E 2016-09-27 00:00:00
#> 4 ABBY_002.basePlot… ABBY ABBY_… ABBY_002.E.2017… E 2017-05-17 00:00:00
#> 5 ABBY_002.basePlot… ABBY ABBY_… ABBY_002.E.2017… E 2017-05-31 00:00:00
#> 6 ABBY_002.basePlot… ABBY ABBY_… ABBY_002.E.2017… E 2017-05-31 00:00:00
#> 7 ABBY_002.basePlot… ABBY ABBY_… ABBY_002.E.2017… E 2017-06-14 00:00:00
#> 8 ABBY_002.basePlot… ABBY ABBY_… ABBY_002.E.2017… E 2017-06-14 00:00:00
#> 9 ABBY_002.basePlot… ABBY ABBY_… ABBY_002.E.2017… E 2017-06-28 00:00:00
#> 10 ABBY_002.basePlot… ABBY ABBY_… ABBY_002.E.2018… E 2018-05-01 00:00:00
#> # ℹ 81,571 more rows
#> # ℹ 16 more variables: taxon_id <chr>, taxon_name <chr>, taxon_rank <chr>,
#> # variable_name <chr>, value <dbl>, unit <chr>, boutID <chr>,
#> # nativeStatusCode <chr>, release <chr>, remarks <chr>,
#> # samplingProtocolVersion <chr>, trappingDays <chr>, latitude <dbl>,
#> # longitude <dbl>, elevation <dbl>, nlcdClass <chr>
neonDivData::data_bird
#> # A tibble: 264,617 × 35
#> location_id siteID plotID pointID unique_sample_id observation_datetime
#> <chr> <chr> <chr> <chr> <chr> <dttm>
#> 1 BART_025.birdGri… BART BART_… 3 BART_025.3.2015… 2015-06-14 09:23:00
#> 2 BART_025.birdGri… BART BART_… 3 BART_025.3.2015… 2015-06-14 09:23:00
#> 3 BART_025.birdGri… BART BART_… 3 BART_025.3.2015… 2015-06-14 09:23:00
#> 4 BART_025.birdGri… BART BART_… 3 BART_025.3.2015… 2015-06-14 09:23:00
#> 5 BART_025.birdGri… BART BART_… 3 BART_025.3.2015… 2015-06-14 09:23:00
#> 6 BART_025.birdGri… BART BART_… 2 BART_025.2.2015… 2015-06-14 09:43:00
#> 7 BART_025.birdGri… BART BART_… 2 BART_025.2.2015… 2015-06-14 09:43:00
#> 8 BART_025.birdGri… BART BART_… 2 BART_025.2.2015… 2015-06-14 09:43:00
#> 9 BART_025.birdGri… BART BART_… 2 BART_025.2.2015… 2015-06-14 09:43:00
#> 10 BART_025.birdGri… BART BART_… 1 BART_025.1.2015… 2015-06-14 10:31:00
#> # ℹ 264,607 more rows
#> # ℹ 29 more variables: taxon_id <chr>, taxon_name <chr>, taxon_rank <chr>,
#> # variable_name <chr>, value <dbl>, unit <chr>, pointCountMinute <chr>,
#> # targetTaxaPresent <chr>, nativeStatusCode <chr>, observerDistance <chr>,
#> # detectionMethod <chr>, visualConfirmation <chr>, sexOrAge <chr>,
#> # release <chr>, startCloudCoverPercentage <chr>,
#> # endCloudCoverPercentage <chr>, startRH <chr>, endRH <chr>, …
neonDivData::data_fish
#> # A tibble: 6,566 × 27
#> location_id siteID pointID unique_sample_id observation_datetime taxon_id
#> <chr> <chr> <chr> <chr> <dttm> <chr>
#> 1 HOPB.AOS.fish.… HOPB point.… HOPB.20170501.0… 2017-05-01 00:00:00 RHIATR
#> 2 HOPB.AOS.fish.… HOPB point.… HOPB.20170501.0… 2017-05-01 00:00:00 SALTRU
#> 3 HOPB.AOS.fish.… HOPB point.… HOPB.20170501.0… 2017-05-01 00:00:00 SALFON
#> 4 HOPB.AOS.fish.… HOPB point.… HOPB.20171023.0… 2017-10-23 00:00:00 RHIATR
#> 5 HOPB.AOS.fish.… HOPB point.… HOPB.20171023.0… 2017-10-23 00:00:00 SALTRU
#> 6 HOPB.AOS.fish.… HOPB point.… HOPB.20171023.0… 2017-10-23 00:00:00 SALFON
#> 7 HOPB.AOS.fish.… HOPB point.… HOPB.20171023.0… 2017-10-23 00:00:00 SEMATR
#> 8 HOPB.AOS.fish.… HOPB point.… HOPB.20190506.0… 2019-05-06 00:00:00 RHIATR
#> 9 HOPB.AOS.fish.… HOPB point.… HOPB.20190506.0… 2019-05-06 00:00:00 SALFON
#> 10 HOPB.AOS.fish.… HOPB point.… HOPB.20190506.0… 2019-05-06 00:00:00 SEMATR
#> # ℹ 6,556 more rows
#> # ℹ 21 more variables: taxon_name <chr>, taxon_rank <chr>, variable_name <chr>,
#> # value <dbl>, unit <chr>, reachID <chr>, samplerType <chr>,
#> # fixedRandomReach <chr>, measuredReachLength <chr>, efTime <chr>,
#> # mean_efishtime <dbl>, release <chr>, netSetTime <chr>, netEndTime <chr>,
#> # netDeploymentTime <chr>, netLength <chr>, netDepth <chr>, efTime2 <chr>,
#> # latitude <dbl>, longitude <dbl>, elevation <dbl>
neonDivData::data_herp_bycatch
#> # A tibble: 2,766 × 22
#> location_id siteID plotID unique_sample_id trapID observation_datetime
#> <chr> <chr> <chr> <chr> <chr> <dttm>
#> 1 BART_002.basePlot… BART BART_… BART_002.W.2014… W 2014-06-12 00:00:00
#> 2 BART_028.basePlot… BART BART_… BART_028.W.2014… W 2014-06-12 00:00:00
#> 3 BART_066.basePlot… BART BART_… BART_066.E.2014… E 2014-06-12 00:00:00
#> 4 BART_031.basePlot… BART BART_… BART_031.E.2014… E 2014-06-26 00:00:00
#> 5 BART_066.basePlot… BART BART_… BART_066.N.2014… N 2014-06-26 00:00:00
#> 6 BART_068.basePlot… BART BART_… BART_068.W.2014… W 2014-06-26 00:00:00
#> 7 BART_002.basePlot… BART BART_… BART_002.N.2014… N 2014-07-10 00:00:00
#> 8 BART_031.basePlot… BART BART_… BART_031.S.2014… S 2014-07-10 00:00:00
#> 9 BART_028.basePlot… BART BART_… BART_028.N.2014… N 2014-07-10 00:00:00
#> 10 BART_031.basePlot… BART BART_… BART_031.N.2014… N 2014-07-24 00:00:00
#> # ℹ 2,756 more rows
#> # ℹ 16 more variables: taxon_id <chr>, taxon_name <chr>, taxon_rank <chr>,
#> # variable_name <chr>, value <dbl>, unit <chr>, trappingDays <chr>,
#> # release <chr>, nativeStatusCode <chr>, remarksSorting <chr>,
#> # remarksFielddata <chr>, latitude <dbl>, longitude <dbl>, elevation <dbl>,
#> # plotType <chr>, nlcdClass <chr>
neonDivData::data_macroinvertebrate
#> # A tibble: 117,383 × 25
#> location_id siteID unique_sample_id observation_datetime taxon_id taxon_name
#> <chr> <chr> <chr> <dttm> <chr> <chr>
#> 1 ARIK.AOS.re… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 ABLSP Ablabesmy…
#> 2 ARIK.AOS.re… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 BAESP Baetidae …
#> 3 ARIK.AOS.re… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CAESP5 Caenis sp.
#> 4 ARIK.AOS.re… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CALFLU Callibaet…
#> 5 ARIK.AOS.re… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CERSP18 Ceratopog…
#> 6 ARIK.AOS.re… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CHISP2 Chironomi…
#> 7 ARIK.AOS.re… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CHISP8 Chironomu…
#> 8 ARIK.AOS.re… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CLISP3 Clinotany…
#> 9 ARIK.AOS.re… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 COESP Coenagrio…
#> 10 ARIK.AOS.re… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CORSP4 Corixidae…
#> # ℹ 117,373 more rows
#> # ℹ 19 more variables: taxon_rank <chr>, variable_name <chr>, value <dbl>,
#> # unit <chr>, estimatedTotalCount <chr>, individualCount <chr>,
#> # subsamplePercent <chr>, release <chr>, benthicArea <chr>,
#> # habitatType <chr>, samplerType <chr>, substratumSizeClass <chr>,
#> # remarks <chr>, ponarDepth <dbl>, snagLength <dbl>, snagDiameter <dbl>,
#> # latitude <dbl>, longitude <dbl>, elevation <dbl>
neonDivData::data_mosquito
#> # A tibble: 135,296 × 24
#> location_id siteID unique_sample_id subsampleID observation_datetime taxon_id
#> <chr> <chr> <chr> <chr> <date> <chr>
#> 1 BART_059.m… BART BART_059.201406… BART_059.2… 2014-06-03 AEDCOM
#> 2 BART_059.m… BART BART_059.201406… BART_059.2… 2014-06-03 AEDINT
#> 3 BART_059.m… BART BART_059.201406… BART_059.2… 2014-06-03 AEDABS
#> 4 BART_058.m… BART BART_058.201406… BART_058.2… 2014-06-03 AEDCOM
#> 5 BART_058.m… BART BART_058.201406… BART_058.2… 2014-06-03 AEDINT
#> 6 BART_060.m… BART BART_060.201406… BART_060.2… 2014-06-03 AEDCOM
#> 7 BART_060.m… BART BART_060.201406… BART_060.2… 2014-06-03 AEDABS
#> 8 BART_060.m… BART BART_060.201406… BART_060.2… 2014-06-03 AEDINT
#> 9 BART_054.m… BART BART_054.201406… BART_054.2… 2014-06-03 AEDCOM
#> 10 BART_054.m… BART BART_054.201406… BART_054.2… 2014-06-03 AEDCAN2
#> # ℹ 135,286 more rows
#> # ℹ 18 more variables: taxon_name <chr>, taxon_rank <chr>, variable_name <chr>,
#> # value <dbl>, unit <chr>, nativeStatusCode <chr>,
#> # proportionIdentified <chr>, release <chr>, remarks_sorting <chr>,
#> # samplingProtocolVersion <chr>, sex <chr>, sortDate <chr>, trapHours <chr>,
#> # latitude <dbl>, longitude <dbl>, elevation <dbl>, nlcdClass <chr>,
#> # plotType <chr>
neonDivData::data_plant
#> # A tibble: 1,148,221 × 26
#> location_id siteID plotID unique_sample_id subplotID subplot_id subsubplot_id
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 BART_006.b… BART BART_… BART_006.basePl… 40_1_3 40 1
#> 2 BART_006.b… BART BART_… BART_006.basePl… 40_1_1 40 1
#> 3 BART_006.b… BART BART_… BART_006.basePl… 40_1_3 40 1
#> 4 BART_006.b… BART BART_… BART_006.basePl… 40_1_1 40 1
#> 5 BART_006.b… BART BART_… BART_006.basePl… 41_1_1 41 1
#> 6 BART_006.b… BART BART_… BART_006.basePl… 31_1_4 31 1
#> 7 BART_006.b… BART BART_… BART_006.basePl… 31_1_4 31 1
#> 8 BART_006.b… BART BART_… BART_006.basePl… 41_1_4 41 1
#> 9 BART_006.b… BART BART_… BART_006.basePl… 32_1_2 32 1
#> 10 BART_006.b… BART BART_… BART_006.basePl… 41_1_1 41 1
#> # ℹ 1,148,211 more rows
#> # ℹ 19 more variables: observation_datetime <dttm>, taxon_id <chr>,
#> # taxon_name <chr>, taxon_rank <chr>, variable_name <chr>, value <dbl>,
#> # unit <chr>, presence_absence <dbl>, boutNumber <chr>,
#> # nativeStatusCode <chr>, heightPlantOver300cm <chr>,
#> # heightPlantSpecies <chr>, release <chr>, sample_area_m2 <chr>,
#> # latitude <dbl>, longitude <dbl>, elevation <dbl>, plotType <chr>, …
neonDivData::data_small_mammal
#> # A tibble: 19,098 × 22
#> location_id siteID plotID unique_sample_id observation_datetime taxon_id
#> <chr> <chr> <chr> <chr> <date> <chr>
#> 1 ABBY_002.mammal… ABBY ABBY_… ABBY_002.mammal… 2016-08-27 MIOR
#> 2 ABBY_002.mammal… ABBY ABBY_… ABBY_002.mammal… 2016-08-27 PEKE
#> 3 ABBY_002.mammal… ABBY ABBY_… ABBY_002.mammal… 2016-08-27 PEMA
#> 4 ABBY_002.mammal… ABBY ABBY_… ABBY_002.mammal… 2016-08-27 SOMO
#> 5 ABBY_002.mammal… ABBY ABBY_… ABBY_002.mammal… 2017-04-23 MIOR
#> 6 ABBY_002.mammal… ABBY ABBY_… ABBY_002.mammal… 2017-04-23 PEMA
#> 7 ABBY_002.mammal… ABBY ABBY_… ABBY_002.mammal… 2017-04-23 SOMO
#> 8 ABBY_002.mammal… ABBY ABBY_… ABBY_002.mammal… 2017-04-23 SOSP
#> 9 ABBY_002.mammal… ABBY ABBY_… ABBY_002.mammal… 2017-04-23 SOTR
#> 10 ABBY_002.mammal… ABBY ABBY_… ABBY_002.mammal… 2017-04-23 SOVA
#> # ℹ 19,088 more rows
#> # ℹ 16 more variables: taxon_name <chr>, taxon_rank <chr>, variable_name <chr>,
#> # value <dbl>, unit <chr>, year <chr>, month <chr>,
#> # n_trap_nights_per_bout_per_plot <chr>, n_nights_per_bout <chr>,
#> # nativeStatusCode <chr>, release <chr>, latitude <dbl>, longitude <dbl>,
#> # elevation <dbl>, plotType <chr>, nlcdClass <chr>
neonDivData::data_tick
#> # A tibble: 426,465 × 22
#> location_id siteID plotID unique_sample_id observation_datetime taxon_id
#> <chr> <chr> <chr> <chr> <dttm> <chr>
#> 1 ABBY_001.tickPl… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOSP
#> 2 ABBY_001.tickPl… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOSCA
#> 3 ABBY_001.tickPl… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 AMBAME
#> 4 ABBY_001.tickPl… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 AMBSPP
#> 5 ABBY_001.tickPl… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOSP2
#> 6 ABBY_001.tickPl… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOANG
#> 7 ABBY_001.tickPl… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOPAC
#> 8 ABBY_001.tickPl… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 HAELEP
#> 9 ABBY_001.tickPl… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 DERVAR
#> 10 ABBY_001.tickPl… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOSCA
#> # ℹ 426,455 more rows
#> # ℹ 16 more variables: taxon_name <chr>, taxon_rank <chr>, variable_name <chr>,
#> # value <dbl>, unit <chr>, LifeStage <chr>, release <chr>,
#> # remarks_field <chr>, samplingMethod <chr>, targetTaxaPresent <chr>,
#> # totalSampledArea <chr>, latitude <dbl>, longitude <dbl>, elevation <dbl>,
#> # nlcdClass <chr>, plotType <chr>
neonDivData::data_tick_pathogen
#> # A tibble: 12,190 × 21
#> location_id siteID plotID unique_sample_id observation_datetime taxon_id
#> <chr> <chr> <chr> <chr> <dttm> <chr>
#> 1 HARV_001.tickPl… HARV HARV_… HARV_001.tickPl… 2014-06-02 16:10:00 Borreli…
#> 2 HARV_001.tickPl… HARV HARV_… HARV_001.tickPl… 2014-06-24 13:50:00 Borreli…
#> 3 HARV_001.tickPl… HARV HARV_… HARV_001.tickPl… 2014-07-14 17:53:00 Borreli…
#> 4 HARV_022.tickPl… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Anaplas…
#> 5 HARV_022.tickPl… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Babesia…
#> 6 HARV_022.tickPl… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Borreli…
#> 7 HARV_022.tickPl… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Borreli…
#> 8 HARV_022.tickPl… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Borreli…
#> 9 HARV_022.tickPl… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Borreli…
#> 10 HARV_022.tickPl… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Ehrlich…
#> # ℹ 12,180 more rows
#> # ℹ 15 more variables: taxon_name <chr>, taxon_rank <chr>, variable_name <chr>,
#> # value <dbl>, unit <chr>, lifeStage <chr>, testProtocolVersion <chr>,
#> # release <chr>, n_tests <chr>, n_positive_tests <chr>, latitude <dbl>,
#> # longitude <dbl>, elevation <dbl>, nlcdClass <chr>, plotType <chr>Contributions are welcome. You can provide comments and feedback or ask questions by filing an issue on Github here or making pull requests.
Please note that the ‘neonDivData’ project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.